Molecular circuit for exponentiation based on the domain coding strategy

DNA strand displacement (DSD) is an efficient technology for constructing molecular circuits. However, system computing speed and the scale of logical gate circuits remain a huge challenge. In this paper, a new method of coding DNA domains is proposed to carry out logic computation. The structure of DNA strands is designed regularly, and the rules of domain coding are described. Based on this, multiple-input and one-output logic computing modules are built, which are the basic components forming digital circuits. If the module has n inputs, it can implement 2n logic functions, which reduces the difficulty of designing and simplifies the structure of molecular logic circuits. In order to verify the superiority of this method for developing large-scale complex circuits, the square root and exponentiation molecular circuits are built. Under the same experimental conditions, compared with the dual-track circuits, the simulation results show that the molecular circuits designed based on the domain coding strategy have faster response time, simpler circuit structure, and better parallelism and scalability. The method of forming digital circuits based on domain coding provides a more effective way to realize intricate molecular control systems and promotes the development of DNA computing

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

A Four-Dimensional Evaluation of the Urban Comprehensive Carrying Capacity of the Yangtze River Delta, China

The evaluation of urban comprehensive carrying capacity (UCC) is of great importance in maintaining urban socio-economic sustainable development. However, UCC is still in its nascent period with limited applications and a lack of credible assessment methods. To enrich this field, this study constructed an objective scientific index to evaluate the UCC of the Yangtze River Delta (YRD) region from a four-dimensional perspective, examining economy, society, environmental, and transportation subsystems. The improved entropy method based on 18 weighted indicators was used to measure the UCC of the 26 cities of the YRD for the period 1990–2018. Results indicate that nine cities were overloaded in 2018, meaning comprehensive carrying capacity demand exceeds supply, and the other seventeen were in loadable condition, meaning such demand did not exceed supply; the social and transportation subsystems are the most important because their index weights and UCC levels are higher than the other two subsystems; the overall UCC for all cities in the YRD is at a medium level, and there are large disparities between the various cities. The empirical results imply that the government should take effective measures to improve UCC in these cities, combining cities’ specific advantages to enhance the efficiency of resource allocation and utilization and improve carrying capacities, and changing the mode of economic development. Based on UCC levels, it is also important to improve environmental conditions and coordination and integration in the development of urbanization. Policy implications on improving UCC have been highlighted in the final section

Cluster-Based Improved Isolation Forest

Outlier detection is an important research direction in the field of data mining. Aiming at the problem of unstable detection results and low efficiency caused by randomly dividing features of the data set in the Isolation Forest algorithm in outlier detection, an algorithm CIIF (Cluster-based Improved Isolation Forest) that combines clustering and Isolation Forest is proposed. CIIF first uses the k-means method to cluster the data set, selects a specific cluster to construct a selection matrix based on the results of the clustering, and implements the selection mechanism of the algorithm through the selection matrix; then builds multiple isolation trees. Finally, the outliers are calculated according to the average search length of each sample in different isolation trees, and the Top-n objects with the highest outlier scores are regarded as outliers. Through comparative experiments with six algorithms in eleven real data sets, the results show that the CIIF algorithm has better performance. Compared to the Isolation Forest algorithm, the average AUC (Area under the Curve of ROC) value of our proposed CIIF algorithm is improved by 7%

Corneal Reinnervation and Sensitivity Recovery after Pterygium Excision

Purpose. To evaluate changes in corneal sensitivity and subbasal nerve density after pterygium excision. Methods. This prospective trial included 22 eyes with nasal primary pterygium and 18 controls. Corneal sensitivity was evaluated using a Cochet–Bonnet esthesiometer in the nasal, superior, temporal, inferior, and center quadrants of the cornea before surgery and 10 days, 1 month, and 3months after surgery. The central cornea was analyzed using in vivo confocal microscopy (IVCM) before surgery and 1 and 3 months after surgery. Subbasal nerve density and other nerve parameters were analyzed using NeuronJ. Nerve tortuosity was evaluated and graded in individual IVCM scans. The tear film break-up time (TBUT) test and Schirmer’s test were performed before surgery, as well as 1 and 3 months after surgery. All the same tests were performed in the controls. Results. All affected eyes showed a significant increase in corneal sensitivity in the nasal corneal quadrant after surgery when compared with preoperative data (F = 37.3; P<0.01). Compared with controls, pterygium patients demonstrated decreased corneal subbasal nerve density (P<0.01), fewer nerve trunks (P<0.01), and fewer nerve branches (P<0.05). However, an increased central corneal subbasal nerve density was observed 1 month after surgery compared with preoperative data, after which the density became stable (F = 9.62; P<0.01). Nerve tortuosity showed no difference between the two groups or across different time points in patients. Similarly, patients with pterygium demonstrated a decrease in TBUT (P<0.01) when compared with controls. A tendency toward increase was observed in the TBUT test after pterygium excision (F = 2.873; P=0.07). However, no difference was observed in Schirmer’s test. Conclusion. Pterygium patients demonstrated deteriorated corneal subbasal nerve fibers when compared with healthy controls in terms of nerve length, nerve trunks, and nerve branches. Therefore, pterygium excision improves corneal sensitivity and increases corneal subbasal nerve density

Fibrinogen as a Prognostic Predictor in Pediatric Patients with Sepsis: A Database Study

Background. Systemic inflammatory response and vascular endothelial cell injury during sepsis lead to coagulopathy. Fibrinogen has been reported as a biomarker of coagulopathy; however, the prognostic value of fibrinogen remains undefined in pediatric patients with sepsis. The aim of this study was to assess fibrinogen level on pediatric intensive care unit (PICU) admission and to elucidate the relationship between fibrinogen levels and in-hospital mortality in children with sepsis. Methods. We conducted a database study. The sepsis database was divided into a training set (between July 2014 and June 2018) and a validation set (from July 2018 to June 2019). The clinical and laboratory parameters on PICU admission and in-hospital mortality in sepsis database were collected and analyzed. Results. A total of 819 pediatric patients were included from database as a training set. The overall hospital mortality was 12.1% (99/819). The fibrinogen levels were significantly lower in nonsurvivors than survivors. Multivariate logistic regression analysis showed significant associations between fibrinogen, lactate level, and hospital mortality (fibrinogen: odds ratio (OR), 0.767 (95% CI: 0.628-0.937), P=0.009; lactate: OR, 1.346 (95% CI: 1.217-1.489), P<0.001, respectively), which was confirmed in a validation set (0.616 [95% CI: 0.457-0.829], P=0.001; 1.397 [95% CI: 1.245-1.569], P<0.001, respectively). The hospital mortality of patients with fibrinogen<1 g/L, 1-2 g/L, 2-3 g/L, or over 3 g/L displayed an obvious difference (62.5% vs. 27.66% vs. 18.1% vs. 4.2%, respectively). Furthermore, the area under the receiver operating characteristic curve (ROC) for fibrinogen in predicting hospital mortality was 0.780 (95% CI: 0.711-0.850) in pediatric patients with sepsis. Conclusions. Fibrinogen is a valuable prognostic biomarker for pediatric sepsis. The level of fibrinogen lower than 2 g/L on PICU admission is closely related to the greater risk of hospital death in pediatric sepsis

Landscape design and allocation for demonstrating the distinctive germplasm resources of SHNU offers in 2015 Shanghai International Flower Show

Combing with its theme——″The Delicate Horticulture & The Beautiful Homeland″,the 2015 Shanghai International Flower Show offers SHNU a special outdoor stand for distinctive germplasm resources to shine in different aspects of subject creativity.Many properties of the landscaping,such as landscape arrangement,season reflection,color configuration,personal training,identification,landscaping,season reflection,afforested maintenance,were discused and analyzed in this study.A proposal on how to improve the achievements in scientific research and application of the splendid germplasm resources to a further step was provided as well.The practice of the doemonstration for SHNU′s of germplasm resources in the show gave us a lot of inspirations such as doing more study and develop more plant varieties in order to meeting the social demands,furthermore,promoting the development of the horticulture industry

Apolipoprotein A-V Is a Novel Diagnostic and Prognostic Predictor in Pediatric Patients with Sepsis: A Prospective Pilot Study in PICU

Background. Sepsis induces the release of lipid mediators, which control both lipid metabolism and inflammation. However, the role of serum apolipoprotein A-V (ApoA5) in sepsis is poorly understood in pediatric patients. Methods. ApoA5 was screened from serum proteomics profile in lipopolysaccharide- (LPS-) treated mice for 2 h, 24 h, and controls. Then, we conducted a prospective pilot study, and patients with sepsis admitted to a pediatric intensive care unit (PICU) were enrolled from January 2018 to December 2018. Serum ApoA5 levels on PICU admission were determined using enzyme-linked immunosorbent assays (ELISA). Blood samples from 30 healthy children were used as control. The correlation of ApoA5 with the clinical and laboratory parameters was analyzed. Logistic regression analyses and receiver operating characteristic curve (ROC) analysis were used to investigate the potential role of serum ApoA5 as a prognostic predictor for PICU mortality in pediatric patients with sepsis. Results. A total of 101 patients with sepsis were enrolled in this study. The PICU mortality rate was 10.9% (11/101). Serum ApoA5 levels on PICU admission were significantly lower in nonsurvivors with sepsis compared with survivors (P=0.009). In subgroup analysis, serum levels of ApoA5 were significantly correlated with sepsis-associated multiple organ dysfunction syndrome (MODS) (P0.05). Correlation analyses revealed significant correlations of serum ApoA5 with Ca2+ concentration. Remarkably, the area under ROC curve (AUC) for serum ApoA5 levels on PICU admission was 0.789 for prediction of PICU mortality with a sensitivity of 75% and a specificity of 84.5% at a threshold value of 822 ng/mL. Conclusions. Serum ApoA5 level is associated with sepsis-associated shock, AKI, ALI, GI dysfunction, or MODS in children. Moreover, the findings of the present study suggest a prognostic value of ApoA5 in children with sepsis, and lower serum ApoA5 than 822 ng/mL predicts worse outcome in pediatric sepsis

Evaluating the bioequivalence of two pitavastatin calcium formulations based on IVIVC modeling and clinical study

Abstract In vitro‐in vivo correlation (IVIVC) allows prediction of the in vivo performance of a pharmaceutical product based on its in vitro drug release profiles and can be used to reduce the number of bioequivalence (BE) studies during product development, and facilitate certain regulatory decisions. Here, we developed an IVIVC model for pitavastatin calcium, a basic Biopharmaceutics Classification System (BCS) II lipid‐lowering drug, which was then used to predict the BE outcome of formulations manufactured at two manufacturers. In addition, virtual trials using the IVIVC model using pH 4.0 acetate buffer dissolution showed similarity in areas under the curves and maximum plasma concentration (Cmax) for test and reference tablets under fasting condition. These predicted results were verified in definitive BE study. In conclusion, we demonstrated that for certain BCS II molecules, IVIVC modeling could be used as a priori to predict the BE outcome